Uniformly modified 2'-deoxy-2'-fluoro-phosphorothioate oligonucleotides as nuclease-resistant antisense compounds with high affinity and specificity for RNA targets

AM Kawasaki, MD Casper, SM Freier… - Journal of medicinal …, 1993 - ACS Publications
AM Kawasaki, MD Casper, SM Freier, EA Lesnik, MC Zounes, LL Cummins, C Gonzalez…
Journal of medicinal chemistry, 1993ACS Publications
“Uniformly” modified phosphodiester or phosphorothioate oligonucleotides incorporating 2'-
deoxy-2'-fluoroadenosine,-guanosine,-uridine, and-cytidine, reported herein for the first time,
when hybridized with RNA afforded consistent additive enhancement of duplex stability
without compromising base-pair specificity. CD spectra of the 2,-deoxy-2'-fluoro-modified
oligonucleotides hybridized with RNA indicated that the duplex adopts a fully A-
formconformation. The 2'-deoxy-2/-fiuoro-modified oligonucleotides in phosphodiester form …
“Uniformly” modified phosphodiester or phosphorothioate oligonucleotides incorporating 2'-deoxy-2'-fluoroadenosine,-guanosine,-uridine, and-cytidine, reported herein for the first time, when hybridized with RNA afforded consistent additive enhancement of duplex stability without compromising base-pair specificity. CD spectra of the 2,-deoxy-2'-fluoro-modified oligonucleotides hybridized with RNA indicated that the duplex adopts a fully A-formconformation. The 2'-deoxy-2/-fiuoro-modified oligonucleotides in phosphodiester form were not resistant to nucleases; however, the modified phosphorothioate oligonucleotides were highly nuclease resistant and retained exceptional binding affinity to the RNA targets. The stabilizing effects of the 2'-deoxy-2'-fluoro modifications on RNA-DNA duplexes were shown to be superior to those of the 2/-0-methylribo substitutions. RNA hybrid duplexes with uniformly 2'-deoxy-2'-fluoro-modified oligonucleotides did not support HeLa RNase H activity; however, incorporation of the modifications into “chimeric” oligonucleotides has been shown to activate mammalian RNase H.“Uniformly” modified 2'-deoxy-2'-fluoro phosphorothioate oligonucleotides afforded antisense molecules with (1) high binding affinity and selectivity for the RNA target and
ACS Publications